STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRG_08863Uncharacterized protein. (714 aa)    
Predicted Functional Partners:
PTRG_01993
Structural maintenance of chromosomes protein.
   
 0.976
PTRG_06072
SCD domain-containing protein.
   
 0.974
PTRG_05324
Rad21_Rec8_N domain-containing protein.
   
 0.936
PTRG_11702
Uncharacterized protein.
   
 0.936
PTRG_09677
Sister chromatid cohesion and DNA repair protein (BimD).
   
 0.904
PTRG_04171
BTB domain-containing protein.
   
 0.897
PTRG_07281
Uncharacterized protein.
   
 0.897
PTRG_07093
Structural maintenance of chromosomes protein.
   
 0.897
PTRG_05673
Structural maintenance of chromosomes protein 5.
   
 0.870
PTRG_03307
Structural maintenance of chromosomes protein.
   
 0.834
Your Current Organism:
Pyrenophora triticirepentis
NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.