STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRG_09290Ankyrin repeat and zinc finger domain containing protein 1. (642 aa)    
Predicted Functional Partners:
TIF6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.
    
   0.813
PTRG_05837
Cell division cycle protein 48; Belongs to the AAA ATPase family.
    
 
 0.800
PTRG_07064
ATP-dependent Zn protease.
    
 
 0.800
PTRG_04731
Proteasome-activating nucleotidase.
    
 
 0.725
PTRG_08285
Cell division cycle protein 48.
   
 
 0.715
PTRG_08675
ATPase_AAA_core domain-containing protein.
    
 
 0.635
PTRG_09326
AAA domain-containing protein.
    
 
 0.635
PTRG_10671
AAA domain-containing protein.
    
 
 0.635
PTRG_11517
Serologically defined colon cancer antigen 1.
   
 
 0.625
PTRG_04100
Ubiquitin conjugation factor E4.
    
 
 0.598
Your Current Organism:
Pyrenophora triticirepentis
NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.