STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRG_09656Tetratricopeptide repeat domain containing protein. (729 aa)    
Predicted Functional Partners:
PTRG_01630
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 0.710
PTRG_11164
RNA polymerase II accessory factor.
    
 0.634
PTRG_09532
Anaphase-promoting complex subunit Cut9.
    
 0.627
PTRG_10204
Uncharacterized protein.
    
 0.627
PTRG_10330
Anaphase-promoting complex subunit 10.
    
 0.625
PTRG_03205
Negative regulator of mitosis.
    
 0.622
PTRG_00886
Uncharacterized protein.
    
 0.617
PTRG_07335
Anaphase-promoting complex protein.
    
 0.607
PTRG_07395
Uncharacterized protein.
    
 0.599
PTRG_06258
Anaphase-promoting complex subunit Apc2; Belongs to the cullin family.
    
 0.597
Your Current Organism:
Pyrenophora triticirepentis
NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.