STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRG_10440ADP-ribosylation factor 6. (220 aa)    
Predicted Functional Partners:
PTRG_09826
DUF1713 domain-containing protein.
   
 0.905
PTRG_02695
Uncharacterized protein.
   
 0.889
PTRG_06250
Uncharacterized protein.
    
 0.838
PTRG_01867
Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events.
    
 0.832
PTRG_00721
RIC1 domain-containing protein.
    
 0.826
PTRG_08889
GTP-binding protein ryh1.
    
 0.811
PTRG_08360
ADP-ribosylation factor 1; Belongs to the small GTPase superfamily. Arf family.
    
0.798
PTRG_07519
Vps53_N domain-containing protein.
     
 0.759
PTRG_10799
t-SNARE affecting a late Golgi compartment protein 2; Belongs to the syntaxin family.
    
  0.735
PTRG_05083
Vps52 / Sac2 family protein.
   
 0.729
Your Current Organism:
Pyrenophora triticirepentis
NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP
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