STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRG_10671AAA domain-containing protein. (727 aa)    
Predicted Functional Partners:
PTRG_07868
Endoplasmic reticulum and nuclear membrane protein Npl4.
   
 0.869
PTRG_08781
UBX domain-containing protein 7.
    
 0.859
PTRG_06455
OTU domain-containing protein.
   
 0.850
PTRG_11040
Uncharacterized protein.
   
 0.838
PTRG_01491
Ubiquitin.
   
 0.817
PTRG_10347
UBX domain containing protein.
    
 0.812
PTRG_08759
UBX domain-containing protein.
    
 0.799
PTRG_02788
Proteasome subunit beta.
   
 0.782
PTRG_00599
Ubiquitin fusion degradation protein.
    
 0.771
PTRG_08418
AZUL domain-containing protein.
    
 0.771
Your Current Organism:
Pyrenophora triticirepentis
NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.