STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRG_11507ATPase_AAA_core domain-containing protein; Belongs to the AAA ATPase family. (605 aa)    
Predicted Functional Partners:
PTRG_11487
Prohibitin.
   
 0.643
PTRG_01850
Stomatin family protein.
   
 0.640
PTRG_01851
Stomatin family protein.
   
 0.640
PTRG_00950
Stomatin family protein.
   
 0.640
PTRG_05489
Prohibitin.
   
 0.640
PTRG_02180
Mitochondrial ribosomal protein s24.
  
 
 0.579
PTRG_09557
Uncharacterized protein.
  
   0.578
PTRG_10393
40S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.
  
   0.575
PTRG_10880
60S ribosomal protein L2, mitochondrial.
  
 
 0.567
PTRG_04113
50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.565
Your Current Organism:
Pyrenophora triticirepentis
NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.