STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
utp25U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (680 aa)    
Predicted Functional Partners:
PTRG_00735
Sas10/Utp3 family protein.
   
 0.999
PTRG_07521
Nucleolar protein 14.
   
 0.997
PTRG_03213
U3 small nucleolar RNA-associated protein 22.
   
 0.994
PTRG_05900
rRNA biogenesis protein RRP5.
   
 
 0.994
PTRG_11999
U3 snoRNP-associated protein Utp7.
   
 
  0.994
PTRG_00236
ATP-dependent RNA helicase DBP8; Belongs to the DEAD box helicase family.
   
 
 0.992
PTRG_02879
PINc domain-containing protein.
   
 
 0.990
RRP36
rRNA biogenesis protein RRP36; Component of the 90S pre-ribosome involved in the maturation of rRNAs. Required for early cleavages of the pre-RNAs in the 40S ribosomal subunit maturation pathway (By similarity).
   
 0.989
PTRG_04536
ATP-dependent RNA helicase ROK1.
   
 
  0.989
PTRG_07579
Nucleolar complex protein 4.
   
 0.989
Your Current Organism:
Pyrenophora triticirepentis
NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.