STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nop9Nucleolar protein 9; RNA-binding nucleolar protein required for pre-rRNA processing. Involved in production of 18S rRNA and assembly of small ribosomal subunit (By similarity); Belongs to the NOP9 family. (700 aa)    
Predicted Functional Partners:
PTRG_00735
Sas10/Utp3 family protein.
   
   0.953
PTRG_09950
Bystin.
   
 
 0.943
PTRG_02571
Nucleolar protein 5A.
   
   0.924
PTRG_04762
Multiple RNA-binding domain containing protein 1.
   
 
 0.903
PTRG_06795
Traub transciption factor family protein.
   
 
 0.900
PTRG_07440
WD_REPEATS_REGION domain-containing protein.
   
   0.889
erb1
Ribosome biogenesis protein erb1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
   0.881
PTRG_02231
ATP-dependent RNA helicase DBP9.
   
 
 0.879
PTRG_02566
RNA helicase.
   
 
 0.879
PTRG_08556
Ribosome biogenesis protein Ssf2.
   
    0.869
Your Current Organism:
Pyrenophora triticirepentis
NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP
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