FOXG_00020 protein (Fusarium oxysporum f. sp. lycopersici)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FOXG_00020

Uncharacterized protein. (118 aa)

Predicted Functional Partners:

FOXG_01462

0.995

FOXG_09287

0.986

FOXG_01201

0.985

FOXG_08329

0.985

FOXG_11300

0.945

FOXG_11277

0.944

FOXG_00010

0.935

FOXG_02365

0.878

GET3

0.582

FOXG_06123

0.567

Your Current Organism:

Fusarium oxysporum f. sp. lycopersici

NCBI taxonomy Id: 426428
Other names: F. oxysporum f. sp. lycopersici 4287, Fusarium oxysporum f. sp. lycopersici 4287

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOXG_00010	FOXG_00020	A0A0D2X804	A0A0D2X814	DNA mismatch repair protein MSH5.	Uncharacterized protein.	0.935
FOXG_00010	FOXG_01201	A0A0D2X804	A0A0D2XBD2	DNA mismatch repair protein MSH5.	EMC1_C domain-containing protein.	0.923
FOXG_00010	FOXG_01462	A0A0D2X804	A0A0D2XC39	DNA mismatch repair protein MSH5.	TPR_REGION domain-containing protein.	0.919
FOXG_00010	FOXG_02365	A0A0D2X804	A0A0D2XEM9	DNA mismatch repair protein MSH5.	Uncharacterized protein.	0.850
FOXG_00010	FOXG_08329	A0A0D2X804	A0A0D2XWG3	DNA mismatch repair protein MSH5.	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.863
FOXG_00010	FOXG_09287	A0A0D2X804	A0A0D2XZ63	DNA mismatch repair protein MSH5.	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	0.919
FOXG_00020	FOXG_00010	A0A0D2X814	A0A0D2X804	Uncharacterized protein.	DNA mismatch repair protein MSH5.	0.935
FOXG_00020	FOXG_01201	A0A0D2X814	A0A0D2XBD2	Uncharacterized protein.	EMC1_C domain-containing protein.	0.985
FOXG_00020	FOXG_01462	A0A0D2X814	A0A0D2XC39	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.995
FOXG_00020	FOXG_02365	A0A0D2X814	A0A0D2XEM9	Uncharacterized protein.	Uncharacterized protein.	0.878
FOXG_00020	FOXG_06123	A0A0D2X814	A0A0D2XQ81	Uncharacterized protein.	Ribosomal protein S16, mitochondrial.	0.567
FOXG_00020	FOXG_08329	A0A0D2X814	A0A0D2XWG3	Uncharacterized protein.	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.985
FOXG_00020	FOXG_09287	A0A0D2X814	A0A0D2XZ63	Uncharacterized protein.	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	0.986
FOXG_00020	FOXG_11277	A0A0D2X814	A0A0D2Y4S4	Uncharacterized protein.	Uncharacterized protein.	0.944
FOXG_00020	FOXG_11300	A0A0D2X814	A0A0D2Y4U6	Uncharacterized protein.	DUF2012 domain-containing protein.	0.945
FOXG_00020	GET3	A0A0D2X814	A0A0D2XNK3	Uncharacterized protein.	ATPase GET3; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. S [...]	0.582
FOXG_01201	FOXG_00010	A0A0D2XBD2	A0A0D2X804	EMC1_C domain-containing protein.	DNA mismatch repair protein MSH5.	0.923
FOXG_01201	FOXG_00020	A0A0D2XBD2	A0A0D2X814	EMC1_C domain-containing protein.	Uncharacterized protein.	0.985
FOXG_01201	FOXG_01462	A0A0D2XBD2	A0A0D2XC39	EMC1_C domain-containing protein.	TPR_REGION domain-containing protein.	0.995
FOXG_01201	FOXG_02365	A0A0D2XBD2	A0A0D2XEM9	EMC1_C domain-containing protein.	Uncharacterized protein.	0.935