STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D2XDB2WHIM1 domain-containing protein. (606 aa)    
Predicted Functional Partners:
A0A0D2XPW2
Uncharacterized protein.
   
 
 0.746
FOXG_04169
Ubiquitin-60S ribosomal protein L40.
    
 0.650
FOXG_11451
Elongation factor 3.
   
   0.569
A0A0D2XUZ1
Uncharacterized protein.
   
 
 0.478
FOXG_05141
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 and ATG8 for its conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Autophagy is essential for maintenance of amino acid levels and protein synthesis under nitrogen starvation. Required for selective autophagic degradation of the nucleus (nucleophagy) as well as for mitophagy wh [...]
    
 0.477
A0A0D2Y8D8
DUF3437 domain-containing protein.
  
  
 0.470
A0A0D2YCF4
DUF3437 domain-containing protein.
  
  
 0.470
A0A0D2X9X8
E2_bind domain-containing protein.
    
 0.467
FOXG_03025
Ubiquitin C.
   
 0.460
A0A0D2XMM6
AN1-type domain-containing protein.
   
 0.460
Your Current Organism:
Fusarium oxysporum f. sp. lycopersici
NCBI taxonomy Id: 426428
Other names: F. oxysporum f. sp. lycopersici 4287, Fusarium oxysporum f. sp. lycopersici 4287
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.