A0A0D2XT12 protein (Fusarium oxysporum f. sp. lycopersici)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D2XT12

Uncharacterized protein. (928 aa)

Predicted Functional Partners:

FOXG_02025

0.910

FOXG_13952

0.763

FOXG_10515

0.763

FOXG_12693

0.756

A0A0D2XW08

0.732

FOXG_08173

0.726

A0A0D2XR30

0.674

A0A0D2XU89

0.674

A0A0D2YIM9

0.674

A0A0D2XX56

0.644

Your Current Organism:

Fusarium oxysporum f. sp. lycopersici

NCBI taxonomy Id: 426428
Other names: F. oxysporum f. sp. lycopersici 4287, Fusarium oxysporum f. sp. lycopersici 4287

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0D2XR30	A0A0D2XT12	A0A0D2XR30	A0A0D2XT12	Uncharacterized protein.	Uncharacterized protein.	0.674
A0A0D2XR30	A0A0D2XW08	A0A0D2XR30	A0A0D2XW08	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.747
A0A0D2XR30	A0A0D2XX56	A0A0D2XR30	A0A0D2XX56	Uncharacterized protein.	Fe2OG dioxygenase domain-containing protein.	0.708
A0A0D2XR30	FOXG_02025	A0A0D2XR30	A0A0D2XDP5	Uncharacterized protein.	Histone acetyltransferase type B subunit 2.	0.817
A0A0D2XR30	FOXG_08173	A0A0D2XR30	A0A0D2XW09	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.806
A0A0D2XR30	FOXG_10515	A0A0D2XR30	A0A0D2Y2L7	Uncharacterized protein.	Histone H3-like centromeric protein cse-4.	0.708
A0A0D2XR30	FOXG_13952	A0A0D2XR30	A0A0C4DHX6	Uncharacterized protein.	Histone H3; Belongs to the histone H3 family.	0.708
A0A0D2XT12	A0A0D2XR30	A0A0D2XT12	A0A0D2XR30	Uncharacterized protein.	Uncharacterized protein.	0.674
A0A0D2XT12	A0A0D2XU89	A0A0D2XT12	A0A0D2XU89	Uncharacterized protein.	Uncharacterized protein.	0.674
A0A0D2XT12	A0A0D2XW08	A0A0D2XT12	A0A0D2XW08	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.732
A0A0D2XT12	A0A0D2XX56	A0A0D2XT12	A0A0D2XX56	Uncharacterized protein.	Fe2OG dioxygenase domain-containing protein.	0.644
A0A0D2XT12	A0A0D2YIM9	A0A0D2XT12	A0A0D2YIM9	Uncharacterized protein.	Uncharacterized protein.	0.674
A0A0D2XT12	FOXG_02025	A0A0D2XT12	A0A0D2XDP5	Uncharacterized protein.	Histone acetyltransferase type B subunit 2.	0.910
A0A0D2XT12	FOXG_08173	A0A0D2XT12	A0A0D2XW09	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.726
A0A0D2XT12	FOXG_10515	A0A0D2XT12	A0A0D2Y2L7	Uncharacterized protein.	Histone H3-like centromeric protein cse-4.	0.763
A0A0D2XT12	FOXG_12693	A0A0D2XT12	A0A0D2Y8S7	Uncharacterized protein.	DNA (Cytosine-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.756
A0A0D2XT12	FOXG_13952	A0A0D2XT12	A0A0C4DHX6	Uncharacterized protein.	Histone H3; Belongs to the histone H3 family.	0.763
A0A0D2XU89	A0A0D2XT12	A0A0D2XU89	A0A0D2XT12	Uncharacterized protein.	Uncharacterized protein.	0.674
A0A0D2XU89	A0A0D2XW08	A0A0D2XU89	A0A0D2XW08	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.747
A0A0D2XU89	A0A0D2XX56	A0A0D2XU89	A0A0D2XX56	Uncharacterized protein.	Fe2OG dioxygenase domain-containing protein.	0.708