SDJ63395.1 protein (Alkalibacterium thalassium)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDJ63395.1

5-methylcytosine-specific restriction enzyme A. (119 aa)

Predicted Functional Partners:

SDJ63366.1

0.893

SDJ63050.1

0.885

SDJ63217.1

0.861

SDJ63460.1

0.831

SDJ63017.1

0.824

SDJ63497.1

0.811

SDJ63251.1

0.806

SDJ63535.1

0.800

SDJ63641.1

0.795

SDJ63837.1

0.788

Your Current Organism:

Alkalibacterium thalassium

NCBI taxonomy Id: 426701
Other names: A. thalassium, Alkalibacterium thalassium Ishikawa et al. 2009, DSM 19181, NBRC 103241, NRIC 0718, strain T117-1-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDJ63017.1	SDJ63050.1	SAMN04488098_1001104	SAMN04488098_1001105	Phage portal protein, HK97 family.	Phage terminase-like protein, large subunit, contains N-terminal HTH domain.	0.955
SDJ63017.1	SDJ63217.1	SAMN04488098_1001104	SAMN04488098_1001110	Phage portal protein, HK97 family.	Hypothetical protein.	0.894
SDJ63017.1	SDJ63251.1	SAMN04488098_1001104	SAMN04488098_1001111	Phage portal protein, HK97 family.	DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family.	0.855
SDJ63017.1	SDJ63366.1	SAMN04488098_1001104	SAMN04488098_1001114	Phage portal protein, HK97 family.	Phage terminase, small subunit.	0.787
SDJ63017.1	SDJ63395.1	SAMN04488098_1001104	SAMN04488098_1001115	Phage portal protein, HK97 family.	5-methylcytosine-specific restriction enzyme A.	0.824
SDJ63017.1	SDJ63460.1	SAMN04488098_1001104	SAMN04488098_1001117	Phage portal protein, HK97 family.	Protein of unknown function.	0.512
SDJ63017.1	SDJ63497.1	SAMN04488098_1001104	SAMN04488098_1001118	Phage portal protein, HK97 family.	SNF2 family N-terminal domain-containing protein.	0.499
SDJ63017.1	SDJ63535.1	SAMN04488098_1001104	SAMN04488098_1001119	Phage portal protein, HK97 family.	VRR-NUC domain-containing protein.	0.547
SDJ63017.1	SDJ63641.1	SAMN04488098_1001104	SAMN04488098_1001122	Phage portal protein, HK97 family.	Hypothetical protein.	0.608
SDJ63017.1	SDJ63837.1	SAMN04488098_1001104	SAMN04488098_1001128	Phage portal protein, HK97 family.	Hypothetical protein.	0.667
SDJ63050.1	SDJ63017.1	SAMN04488098_1001105	SAMN04488098_1001104	Phage terminase-like protein, large subunit, contains N-terminal HTH domain.	Phage portal protein, HK97 family.	0.955
SDJ63050.1	SDJ63217.1	SAMN04488098_1001105	SAMN04488098_1001110	Phage terminase-like protein, large subunit, contains N-terminal HTH domain.	Hypothetical protein.	0.849
SDJ63050.1	SDJ63251.1	SAMN04488098_1001105	SAMN04488098_1001111	Phage terminase-like protein, large subunit, contains N-terminal HTH domain.	DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family.	0.829
SDJ63050.1	SDJ63366.1	SAMN04488098_1001105	SAMN04488098_1001114	Phage terminase-like protein, large subunit, contains N-terminal HTH domain.	Phage terminase, small subunit.	0.775
SDJ63050.1	SDJ63395.1	SAMN04488098_1001105	SAMN04488098_1001115	Phage terminase-like protein, large subunit, contains N-terminal HTH domain.	5-methylcytosine-specific restriction enzyme A.	0.885
SDJ63050.1	SDJ63460.1	SAMN04488098_1001105	SAMN04488098_1001117	Phage terminase-like protein, large subunit, contains N-terminal HTH domain.	Protein of unknown function.	0.549
SDJ63050.1	SDJ63497.1	SAMN04488098_1001105	SAMN04488098_1001118	Phage terminase-like protein, large subunit, contains N-terminal HTH domain.	SNF2 family N-terminal domain-containing protein.	0.592
SDJ63050.1	SDJ63535.1	SAMN04488098_1001105	SAMN04488098_1001119	Phage terminase-like protein, large subunit, contains N-terminal HTH domain.	VRR-NUC domain-containing protein.	0.645
SDJ63050.1	SDJ63641.1	SAMN04488098_1001105	SAMN04488098_1001122	Phage terminase-like protein, large subunit, contains N-terminal HTH domain.	Hypothetical protein.	0.665
SDJ63050.1	SDJ63837.1	SAMN04488098_1001105	SAMN04488098_1001128	Phage terminase-like protein, large subunit, contains N-terminal HTH domain.	Hypothetical protein.	0.724