STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ81920.1Uncharacterized protein YlbG, UPF0298 family. (106 aa)    
Predicted Functional Partners:
SDJ81871.1
Uncharacterized protein YlaN, UPF0358 family; Belongs to the UPF0358 family.
 
     0.717
SDJ81968.1
Conserved hypothetical protein 95.
  
    0.679
SDK92113.1
Uncharacterized protein YrzB, UPF0473 family; Belongs to the UPF0473 family.
  
     0.524
SDK81252.1
Predicted membrane protein.
  
     0.503
SDK96757.1
Uncharacterized integral membrane protein.
  
     0.497
mecA
Adapter protein MecA 1/2; Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis.
  
     0.492
SDK38229.1
Predicted transcriptional regulator containing CBS domains.
  
     0.490
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.476
SDJ82070.1
PDZ domain-containing protein.
       0.473
SDJ72628.1
5-bromo-4-chloroindolyl phosphate hydrolysis protein.
  
     0.469
Your Current Organism:
Alkalibacterium thalassium
NCBI taxonomy Id: 426701
Other names: A. thalassium, Alkalibacterium thalassium Ishikawa et al. 2009, DSM 19181, NBRC 103241, NRIC 0718, strain T117-1-2
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