STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ95603.1Nuclease-related domain-containing protein. (320 aa)    
Predicted Functional Partners:
SDK67018.1
YrhK-like protein.
  
     0.651
SDK65622.1
Fatty-acid peroxygenase.
  
     0.539
SDK13160.1
Hypothetical protein.
  
     0.523
SDJ78959.1
Hypothetical protein.
  
     0.519
SDJ78919.1
Hypothetical protein.
  
     0.517
SDK29722.1
Hypothetical protein.
  
     0.487
SDK46294.1
Hypothetical protein.
  
     0.481
SDK75482.1
Minor extracellular serine protease Vpr; Belongs to the peptidase S8 family.
  
     0.471
SDJ95642.1
6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase.
       0.432
SDJ60812.1
Putative cell-wall binding lipoprotein.
  
     0.427
Your Current Organism:
Alkalibacterium thalassium
NCBI taxonomy Id: 426701
Other names: A. thalassium, Alkalibacterium thalassium Ishikawa et al. 2009, DSM 19181, NBRC 103241, NRIC 0718, strain T117-1-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.