STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK24907.1PTS system, ascorbate-specific IIB component. (93 aa)    
Predicted Functional Partners:
SDK24875.1
PTS system, ascorbate-specific IIA component.
 
 
 0.992
SDK24841.1
Transcriptional antiterminator.
 
 
 0.989
SDK24942.1
PTS system IIC component, L-Asc family.
 
 
 0.989
SDK52098.1
Uncharacterized protein; PTS system D-fructose-specific IIA component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIB component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIC component (F1P-forming), Frc family (TC 4.A.2.1.4).
 
 
 0.940
SDJ61813.1
Lichenan operon transcriptional antiterminator.
 
 
 0.939
SDK24975.1
Uncharacterized protein, contains SIS (Sugar ISomerase) phosphosugar binding domain.
 
     0.900
SDJ92336.1
Transcriptional antiterminator.
  
 
 0.870
SDK16640.1
PTS system, mannose-specific IIB component.
   
 
 0.826
SDJ78060.1
PTS system, glucose-specific IIC component.
     
 0.806
SDK59275.1
PTS system, beta-glucosides-specific IIC component.
     
 0.806
Your Current Organism:
Alkalibacterium thalassium
NCBI taxonomy Id: 426701
Other names: A. thalassium, Alkalibacterium thalassium Ishikawa et al. 2009, DSM 19181, NBRC 103241, NRIC 0718, strain T117-1-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.