STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK32276.1Hypothetical protein. (344 aa)    
Predicted Functional Partners:
SDK32241.1
PTS system, sucrose-specific IIC component.
 
     0.950
murQ
N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
   
 0.907
SDK32174.1
Transcriptional regulator, RpiR family.
 
     0.860
SDK32356.1
Acetyl esterase/lipase.
       0.441
SDK51369.1
PTS system, cellobiose-specific IIB component.
 
     0.437
SDK51406.1
PTS system, cellobiose-specific IIA component.
 
     0.429
SDK32394.1
Alcohol acetyltransferase.
       0.421
SDK32432.1
Hypothetical protein.
       0.421
SDJ61742.1
PTS system, cellobiose-specific IIA component.
 
     0.418
SDJ77760.1
Transcriptional regulator, RpiR family.
 
     0.400
Your Current Organism:
Alkalibacterium thalassium
NCBI taxonomy Id: 426701
Other names: A. thalassium, Alkalibacterium thalassium Ishikawa et al. 2009, DSM 19181, NBRC 103241, NRIC 0718, strain T117-1-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.