STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK71789.1mRNA interferase MazF. (116 aa)    
Predicted Functional Partners:
SDK71829.1
Antitoxin PrlF.
 
   
 0.938
SDK60739.1
Hypothetical protein.
  
 0.826
SDK78936.1
Antitoxin component of the MazEF toxin-antitoxin module.
  
 0.826
SDJ95181.1
CopG family transcriptional regulator / antitoxin EndoAI.
  
 
 0.788
SDK71868.1
pRiA4b ORF-3-like protein.
       0.528
SDK71903.1
pRiA4b ORF-3-like protein.
 
     0.513
SDK16010.1
Transcriptional regulator, HxlR family.
   
    0.453
Your Current Organism:
Alkalibacterium thalassium
NCBI taxonomy Id: 426701
Other names: A. thalassium, Alkalibacterium thalassium Ishikawa et al. 2009, DSM 19181, NBRC 103241, NRIC 0718, strain T117-1-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.