STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK74370.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (227 aa)    
Predicted Functional Partners:
SDK74333.1
His Kinase A (phospho-acceptor) domain-containing protein.
 0.976
SDK04118.1
PAS domain S-box-containing protein.
 0.959
SDK11483.1
Signal transduction histidine kinase.
 0.954
SDK59144.1
Signal transduction histidine kinase.
 0.949
SDL00755.1
PAS domain S-box-containing protein.
  
 0.930
SDK32548.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.923
SDK93404.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.923
SDK35411.1
PAS/PAC sensor signal transduction histidine kinase.
 0.869
SDK08776.1
Signal transduction histidine kinase.
 0.855
SDK45517.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 0.849
Your Current Organism:
Alkalibacterium thalassium
NCBI taxonomy Id: 426701
Other names: A. thalassium, Alkalibacterium thalassium Ishikawa et al. 2009, DSM 19181, NBRC 103241, NRIC 0718, strain T117-1-2
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.