STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK90159.1Putative ABC transport system permease protein. (254 aa)    
Predicted Functional Partners:
SDK90120.1
Putative ABC transport system ATP-binding protein.
 
     0.947
SDK90038.1
Hypothetical protein.
       0.628
SDK90083.1
Uncharacterized membrane-anchored protein YitT, contains DUF161 and DUF2179 domains.
       0.628
SDK90201.1
3D (Asp-Asp-Asp) domain-containing protein.
       0.425
Your Current Organism:
Alkalibacterium thalassium
NCBI taxonomy Id: 426701
Other names: A. thalassium, Alkalibacterium thalassium Ishikawa et al. 2009, DSM 19181, NBRC 103241, NRIC 0718, strain T117-1-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.