STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK22161.1DNA-binding transcriptional regulator, XRE family. (67 aa)    
Predicted Functional Partners:
SEK22361.1
Hypothetical protein.
 
     0.816
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
  
 
  0.770
SEK22468.1
Recombinase.
  
     0.760
SEK22695.1
Resolvase, N terminal domain.
  
     0.754
SEK22199.1
Type I restriction enzyme, R subunit.
       0.668
SEK22288.1
Type I restriction enzyme, S subunit.
       0.615
SEK22246.1
Type I restriction enzyme M protein.
       0.604
SEK61805.1
Phage-related protein.
  
     0.525
SEK22401.1
Site-specific recombinase XerD.
 
     0.485
SEK22655.1
Hypothetical protein.
  
     0.419
Your Current Organism:
Alkalibacterium pelagium
NCBI taxonomy Id: 426702
Other names: A. pelagium, Alkalibacterium pelagium Ishikawa et al. 2009, DSM 19183, NBRC 103242, NRIC 0719, strain T143-1-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.