STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK17511.1YbbR domain-containing protein. (342 aa)    
Predicted Functional Partners:
dacA
Diadenylate cyclase; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
  
 0.972
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
  
  
 0.759
SEK21948.1
Protein involved in sex pheromone biosynthesis.
  
     0.707
SEK57264.1
Two-component signal transduction system YycFG, regulatory protein YycI.
  
     0.695
SEK57311.1
Two-component signal transduction system YycFG, regulatory protein YycH.
  
    0.676
SEL18586.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
    0.658
SEL21596.1
Replicative DNA helicase loader DnaB.
  
     0.656
SEK91438.1
Cell division protein FtsI/penicillin-binding protein 2.
  
     0.654
SEK18637.1
Competence protein ComFA.
  
     0.601
SEK17517.1
Uncharacterized membrane protein.
 
     0.595
Your Current Organism:
Alkalibacterium pelagium
NCBI taxonomy Id: 426702
Other names: A. pelagium, Alkalibacterium pelagium Ishikawa et al. 2009, DSM 19183, NBRC 103242, NRIC 0719, strain T143-1-1
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