STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK53868.1Helix-turn-helix domain-containing protein. (307 aa)    
Predicted Functional Partners:
SEK53749.1
Phosphopentomutase.
 
  
  0.949
SEK53788.1
Predicted amino acid racemase.
 
     0.942
SEK53905.1
Aminotransferase class-V.
 
     0.942
SEK53943.1
Phosphotriesterase-related protein.
 
     0.942
SEK53981.1
Protein of unknown function.
 
     0.905
SEK54015.1
Protein of unknown function DUF2620.
 
     0.902
SEK53825.1
PRD domain-containing protein.
       0.777
SEK39958.1
AraC-type DNA-binding protein.
   
  
 0.517
SEL38460.1
AraC-type DNA-binding protein.
   
  
 0.517
SEK70665.1
PTS system, glucose-specific IIC component.
  
  
 0.432
Your Current Organism:
Alkalibacterium pelagium
NCBI taxonomy Id: 426702
Other names: A. pelagium, Alkalibacterium pelagium Ishikawa et al. 2009, DSM 19183, NBRC 103242, NRIC 0719, strain T143-1-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.