STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxuAD-mannonate dehydratase; Catalyzes the dehydration of D-mannonate. (360 aa)    
Predicted Functional Partners:
uxaC
D-glucuronate isomerase.
 
  
 0.970
SEK49192.1
Fructuronate reductase.
 
 0.946
SEK99863.1
2-keto-3-deoxygluconate kinase.
 
  
 0.940
SEK49112.1
Alpha-glucuronidase.
     0.799
SEK70239.1
6-phosphogluconate dehydrogenase.
    
  0.797
SEK99772.1
DNA-binding transcriptional regulator, GntR family.
 
   
 0.716
SEK99820.1
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
 
   
 0.690
SEK49022.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
       0.581
SEK48981.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
       0.559
dapA
4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
   
 
 0.500
Your Current Organism:
Alkalibacterium pelagium
NCBI taxonomy Id: 426702
Other names: A. pelagium, Alkalibacterium pelagium Ishikawa et al. 2009, DSM 19183, NBRC 103242, NRIC 0719, strain T143-1-1
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