STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK49112.1Alpha-glucuronidase. (653 aa)    
Predicted Functional Partners:
SEK48598.1
Glycosyl hydrolase family 67 N-terminus.
 
     0.800
uxuA
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
     0.799
SEK20180.1
Endo-1,4-beta-xylanase.
 
   
 0.795
SEK48520.1
Endo-1,4-beta-xylanase.
 
   
 0.795
SEK83040.1
Endo-1,4-beta-xylanase.
 
   
 0.795
SEK48942.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.688
SEK48437.1
Sialate O-acetylesterase.
 
     0.680
SEK48548.1
Reducing-end-xylose releasing exo-oligoxylanase.
 
   
 0.653
SEK48221.1
Putative aldouronate transport system substrate-binding protein.
 
     0.626
SEK49022.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
     0.620
Your Current Organism:
Alkalibacterium pelagium
NCBI taxonomy Id: 426702
Other names: A. pelagium, Alkalibacterium pelagium Ishikawa et al. 2009, DSM 19183, NBRC 103242, NRIC 0719, strain T143-1-1
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