STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK76159.1Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. (498 aa)    
Predicted Functional Partners:
SEK70797.1
Pullulanase, extracellular; Belongs to the glycosyl hydrolase 13 family.
    
 0.798
deoD
Purine-nucleoside phosphorylase.
  
    0.757
SEK76194.1
Signal peptidase I; Belongs to the peptidase S26 family.
 
   
 0.699
SEK76102.1
Uncharacterized protein YozE, UPF0346 family; Belongs to the UPF0346 family.
       0.675
SEK23305.1
Protein of unknown function.
   
   0.664
SEK48598.1
Glycosyl hydrolase family 67 N-terminus.
   
   0.664
SEK79217.1
Protein of unknown function.
   
   0.664
msrA
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
 
    0.652
SEL01996.1
Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains.
  
    0.614
SEK76042.1
Uncharacterized protein YpmS.
     
 0.577
Your Current Organism:
Alkalibacterium pelagium
NCBI taxonomy Id: 426702
Other names: A. pelagium, Alkalibacterium pelagium Ishikawa et al. 2009, DSM 19183, NBRC 103242, NRIC 0719, strain T143-1-1
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