STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK83040.1Endo-1,4-beta-xylanase. (1312 aa)    
Predicted Functional Partners:
SEK49112.1
Alpha-glucuronidase.
 
   
 0.795
SEK48548.1
Reducing-end-xylose releasing exo-oligoxylanase.
 
   
 0.755
SEK48598.1
Glycosyl hydrolase family 67 N-terminus.
  
     0.743
SEK60427.1
Glycosyl hydrolase family 65, N-terminal domain.
  
     0.737
SEK49226.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
  
  
  0.707
SEK48184.1
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 43 family.
  
  
  0.704
SEK60966.1
Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
 0.689
SEK48654.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
  
  
  0.683
SEK48437.1
Sialate O-acetylesterase.
  
  
  0.671
SEK60925.1
Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
 0.655
Your Current Organism:
Alkalibacterium pelagium
NCBI taxonomy Id: 426702
Other names: A. pelagium, Alkalibacterium pelagium Ishikawa et al. 2009, DSM 19183, NBRC 103242, NRIC 0719, strain T143-1-1
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