STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK83539.1Glycine betaine/proline transport system substrate-binding protein. (284 aa)    
Predicted Functional Partners:
SEK83501.1
Glycine betaine/proline transport system ATP-binding protein.
 0.999
SEK83576.1
Glycine betaine/proline transport system substrate-binding protein.
 
 0.999
SEK97450.1
Glycine betaine/proline transport system substrate-binding protein.
 
 0.998
SEK71925.1
Osmoprotectant transport system permease protein.
 
 
0.540
SEK76595.1
Acetaldehyde dehydrogenase / alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
     
 0.439
purN
Phosphoribosylglycinamide formyltransferase-1; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
    0.432
SEK85907.1
Threonine/homoserine efflux transporter RhtA.
  
 
  0.430
SEK37955.1
Osmoprotectant transport system permease protein.
 
 
 
0.415
SEK38018.1
Osmoprotectant transport system permease protein.
 
 
 
0.408
Your Current Organism:
Alkalibacterium pelagium
NCBI taxonomy Id: 426702
Other names: A. pelagium, Alkalibacterium pelagium Ishikawa et al. 2009, DSM 19183, NBRC 103242, NRIC 0719, strain T143-1-1
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