STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK90281.1Type IV pilus assembly protein PilC. (400 aa)    
Predicted Functional Partners:
SEK90210.1
Type IV pilus assembly protein PilB.
 
 0.984
SEK90242.1
Twitching motility protein PilT.
  
 0.949
SEL17199.1
Competence protein ComGA.
 
 0.945
SEK90312.1
Type IV pilus assembly protein PilA.
 
  
 0.920
SEK90343.1
Leader peptidase (prepilin peptidase) / N-methyltransferase.
 
  
 0.918
SEK90104.1
Hypothetical protein.
  
  
 0.878
SEK90374.1
Type IV pilus assembly protein PilM.
 
 
 
 0.876
SEL17284.1
Competence protein ComGC.
  
  
 0.792
SEK90043.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
   
 0.775
SEK38727.1
Competence protein ComEC.
   
  
 0.719
Your Current Organism:
Alkalibacterium pelagium
NCBI taxonomy Id: 426702
Other names: A. pelagium, Alkalibacterium pelagium Ishikawa et al. 2009, DSM 19183, NBRC 103242, NRIC 0719, strain T143-1-1
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