STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL17977.1Signal transduction histidine kinase. (507 aa)    
Predicted Functional Partners:
SEL04532.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 0.994
SEL04577.1
PAS domain S-box-containing protein.
 
0.989
SEL17929.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.988
SEL32981.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.950
SEK82859.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.932
SEK85870.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.916
SEK21363.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.912
SEK57417.1
Two-component system, OmpR family, response regulator VicR.
 0.901
SEK59221.1
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP.
 0.898
SEL12652.1
Ribose-binding protein.
 
  
 0.893
Your Current Organism:
Alkalibacterium pelagium
NCBI taxonomy Id: 426702
Other names: A. pelagium, Alkalibacterium pelagium Ishikawa et al. 2009, DSM 19183, NBRC 103242, NRIC 0719, strain T143-1-1
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