STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL24963.1Capsular exopolysaccharide family. (234 aa)    
Predicted Functional Partners:
SEL24926.1
Capsular polysaccharide biosynthesis protein.
 
 0.997
SEL25001.1
Protein-tyrosine phosphatase.
  
 0.966
SEK52205.1
Capsular polysaccharide biosynthesis protein.
 
 0.958
SEK53300.1
Protein-tyrosine phosphatase.
  
 0.887
SEL25081.1
O-antigen biosynthesis protein WbqP.
 
 
 0.854
SEL25038.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
 
 0.832
SEL25217.1
UDP-glucose 4-epimerase.
  
 
 0.799
SEL25248.1
UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase.
  
 
 0.734
SEL25291.1
UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing); Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
 
 0.723
SEK52288.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
 
 0.688
Your Current Organism:
Alkalibacterium pelagium
NCBI taxonomy Id: 426702
Other names: A. pelagium, Alkalibacterium pelagium Ishikawa et al. 2009, DSM 19183, NBRC 103242, NRIC 0719, strain T143-1-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.