STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL31753.1Amidohydrolase. (398 aa)    
Predicted Functional Partners:
SEK59733.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.815
SEL31726.1
Amidohydrolase.
 
    
0.728
SEL31788.1
Peptide/nickel transport system permease protein.
  
    0.648
SEL31823.1
Peptide/nickel transport system permease protein.
       0.615
SEL31868.1
Peptide/nickel transport system substrate-binding protein.
   
   0.453
SEL32005.1
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase.
    
  0.438
Your Current Organism:
Alkalibacterium pelagium
NCBI taxonomy Id: 426702
Other names: A. pelagium, Alkalibacterium pelagium Ishikawa et al. 2009, DSM 19183, NBRC 103242, NRIC 0719, strain T143-1-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.