STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL47583.1Putative lysine transport system substrate-binding protein. (1112 aa)    
Predicted Functional Partners:
SEL47554.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
 
  
 0.952
SEL47617.1
Multiple sugar transport system substrate-binding protein.
 
   
 0.894
SEL95378.1
Pullulanase, extracellular; Belongs to the glycosyl hydrolase 13 family.
   
 
 0.824
SEL47644.1
Multiple sugar transport system permease protein.
 
     0.661
SEL90598.1
Alpha-glucosidase, glycosyl hydrolase family GH31; Belongs to the glycosyl hydrolase 31 family.
  
  
 0.622
SEL47685.1
Multiple sugar transport system permease protein.
 
     0.591
SEL47525.1
S-formylglutathione hydrolase FrmB.
 
     0.577
SEL95164.1
Glycosidase.
  
 
 0.575
SEL60957.1
Phage portal protein, SPP1 family.
  
  
  0.571
SEL98897.1
Pullulanase, type I; Belongs to the glycosyl hydrolase 13 family.
  
  
 0.561
Your Current Organism:
Alkalibacterium putridalgicola
NCBI taxonomy Id: 426703
Other names: A. putridalgicola, Alkalibacterium putridalgicola Ishikawa et al. 2009, DSM 19182, NBRC 103243, NRIC 0720, strain T129-2-1
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