STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL55321.1Hypothetical protein. (119 aa)    
Predicted Functional Partners:
SEM23341.1
CopG family transcriptional regulator / antitoxin EndoAI.
  
     0.765
SEM06570.1
Two-component signal transduction system YycFG, regulatory protein YycH.
  
     0.687
SEL71709.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
  
     0.658
SEL82046.1
Hypothetical protein.
  
     0.658
SEL77671.1
Gas vesicle protein.
  
     0.657
secE
SecE/Sec61-gamma subunits of protein translocation complex; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.640
SEL86846.1
Hypothetical protein.
  
     0.619
ftsL
Cell division protein FtsL; Essential cell division protein; Belongs to the FtsL family.
  
     0.608
SEL74973.1
Hypothetical protein.
  
     0.605
SEL54373.1
Hypothetical protein.
  
     0.594
Your Current Organism:
Alkalibacterium putridalgicola
NCBI taxonomy Id: 426703
Other names: A. putridalgicola, Alkalibacterium putridalgicola Ishikawa et al. 2009, DSM 19182, NBRC 103243, NRIC 0720, strain T129-2-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.