STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL57674.1Alpha galactosidase A. (423 aa)    
Predicted Functional Partners:
SEL57643.1
Hypothetical protein.
 
     0.926
SEL56515.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.840
SEL83026.1
Beta-galactosidase.
 
 
 0.819
SEL57696.1
alpha-N-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.804
SEL82915.1
Evolved beta-galactosidase subunit alpha.
 
  
  0.693
SEL57356.1
alpha-N-arabinofuranosidase.
 
  
 0.673
SEL65971.1
Endo-1,4-beta-xylanase.
  
   
 0.670
SEL60957.1
Phage portal protein, SPP1 family.
    
 0.669
SEM22466.1
Endo-1,4-beta-xylanase.
  
   
 0.665
SEL57417.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.657
Your Current Organism:
Alkalibacterium putridalgicola
NCBI taxonomy Id: 426703
Other names: A. putridalgicola, Alkalibacterium putridalgicola Ishikawa et al. 2009, DSM 19182, NBRC 103243, NRIC 0720, strain T129-2-1
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