STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL67809.1ATP-binding cassette, subfamily B. (570 aa)    
Predicted Functional Partners:
SEL67839.1
Hypothetical protein.
       0.698
SEL64836.1
ATP-binding cassette, subfamily B.
 
 
0.695
SEL47367.1
ATP-binding cassette, subfamily B, tetracycline resistant protein.
 
  
 
0.613
SEL39670.1
ATP-binding cassette, subfamily B.
 
  
 
0.591
SEL90703.1
Iron complex transport system ATP-binding protein.
 
   
0.534
SEL67865.1
Niacin transporter.
       0.511
glyQ
glycyl-tRNA synthetase alpha chain.
       0.497
glyS
glycyl-tRNA synthetase beta chain.
       0.497
ybeY
Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
   0.476
SEM19781.1
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
   
 
0.474
Your Current Organism:
Alkalibacterium putridalgicola
NCBI taxonomy Id: 426703
Other names: A. putridalgicola, Alkalibacterium putridalgicola Ishikawa et al. 2009, DSM 19182, NBRC 103243, NRIC 0720, strain T129-2-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.