STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL71758.1Competence protein ComGB. (354 aa)    
Predicted Functional Partners:
SEL71787.1
Competence protein ComGA.
 
 
 0.992
SEL71731.1
Competence protein ComGC.
 
  
 0.971
SEL71709.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
  
 0.963
SEL80700.1
Type IV pilus assembly protein PilB.
 
 
 0.961
SEL71650.1
Competence protein ComGF.
 
  
 0.960
SEL80837.1
Leader peptidase (prepilin peptidase) / N-methyltransferase.
 
  
 0.855
SEL43631.1
Competence protein ComEA.
  
  
 0.785
SEL80728.1
Twitching motility protein PilT.
 
  
 0.777
SEL43595.1
Competence protein ComEC.
  
  
 0.758
SEL80755.1
Type IV pilus assembly protein PilC.
  
     0.744
Your Current Organism:
Alkalibacterium putridalgicola
NCBI taxonomy Id: 426703
Other names: A. putridalgicola, Alkalibacterium putridalgicola Ishikawa et al. 2009, DSM 19182, NBRC 103243, NRIC 0720, strain T129-2-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.