Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEL41980.1 | SEL75326.1 | SAMN04488100_10196 | SAMN04488100_10953 | Hypothetical protein. | Hypothetical protein. | 0.603 |
SEL41980.1 | SEM23846.1 | SAMN04488100_10196 | SAMN04488100_1387 | Hypothetical protein. | Pyrimidine-nucleoside phosphorylase. | 0.530 |
SEL41980.1 | SEM34037.1 | SAMN04488100_10196 | SAMN04488100_1545 | Hypothetical protein. | PTS system, mannose-specific IIB component. | 0.715 |
SEL41980.1 | pgi | SAMN04488100_10196 | SAMN04488100_11369 | Hypothetical protein. | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.530 |
SEL41980.1 | ribBA | SAMN04488100_10196 | SAMN04488100_12829 | Hypothetical protein. | 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.578 |
SEL75257.1 | SEL75326.1 | SAMN04488100_10951 | SAMN04488100_10953 | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Hypothetical protein. | 0.597 |
SEL75257.1 | ffh | SAMN04488100_10951 | SAMN04488100_10950 | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Signal recognition particle subunit FFH/SRP54 (srp54); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.974 |
SEL75257.1 | ftsY | SAMN04488100_10951 | SAMN04488100_10952 | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.758 |
SEL75257.1 | rnc | SAMN04488100_10951 | SAMN04488100_10955 | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Ribonuclease-3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.542 |
SEL75257.1 | smc | SAMN04488100_10951 | SAMN04488100_10954 | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.578 |
SEL75326.1 | SEL41980.1 | SAMN04488100_10953 | SAMN04488100_10196 | Hypothetical protein. | Hypothetical protein. | 0.603 |
SEL75326.1 | SEL75257.1 | SAMN04488100_10953 | SAMN04488100_10951 | Hypothetical protein. | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.597 |
SEL75326.1 | SEM23846.1 | SAMN04488100_10953 | SAMN04488100_1387 | Hypothetical protein. | Pyrimidine-nucleoside phosphorylase. | 0.534 |
SEL75326.1 | SEM34037.1 | SAMN04488100_10953 | SAMN04488100_1545 | Hypothetical protein. | PTS system, mannose-specific IIB component. | 0.702 |
SEL75326.1 | ffh | SAMN04488100_10953 | SAMN04488100_10950 | Hypothetical protein. | Signal recognition particle subunit FFH/SRP54 (srp54); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.596 |
SEL75326.1 | ftsY | SAMN04488100_10953 | SAMN04488100_10952 | Hypothetical protein. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.683 |
SEL75326.1 | pgi | SAMN04488100_10953 | SAMN04488100_11369 | Hypothetical protein. | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.530 |
SEL75326.1 | ribBA | SAMN04488100_10953 | SAMN04488100_12829 | Hypothetical protein. | 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.535 |
SEL75326.1 | rnc | SAMN04488100_10953 | SAMN04488100_10955 | Hypothetical protein. | Ribonuclease-3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.687 |
SEL75326.1 | smc | SAMN04488100_10953 | SAMN04488100_10954 | Hypothetical protein. | Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.788 |
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