Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEL77589.1 | SEL77620.1 | SAMN04488100_11041 | SAMN04488100_11042 | ABC-2 type transport system permease protein. | ABC-2 type transport system ATP-binding protein. | 0.939 |
SEL77589.1 | SEL77643.1 | SAMN04488100_11041 | SAMN04488100_11043 | ABC-2 type transport system permease protein. | Histidine triad (HIT) family protein. | 0.675 |
SEL77589.1 | SEL77671.1 | SAMN04488100_11041 | SAMN04488100_11044 | ABC-2 type transport system permease protein. | Gas vesicle protein. | 0.561 |
SEL77620.1 | SEL77589.1 | SAMN04488100_11042 | SAMN04488100_11041 | ABC-2 type transport system ATP-binding protein. | ABC-2 type transport system permease protein. | 0.939 |
SEL77620.1 | SEL77643.1 | SAMN04488100_11042 | SAMN04488100_11043 | ABC-2 type transport system ATP-binding protein. | Histidine triad (HIT) family protein. | 0.620 |
SEL77620.1 | SEL77671.1 | SAMN04488100_11042 | SAMN04488100_11044 | ABC-2 type transport system ATP-binding protein. | Gas vesicle protein. | 0.534 |
SEL77643.1 | SEL77589.1 | SAMN04488100_11043 | SAMN04488100_11041 | Histidine triad (HIT) family protein. | ABC-2 type transport system permease protein. | 0.675 |
SEL77643.1 | SEL77620.1 | SAMN04488100_11043 | SAMN04488100_11042 | Histidine triad (HIT) family protein. | ABC-2 type transport system ATP-binding protein. | 0.620 |
SEL77643.1 | SEL77671.1 | SAMN04488100_11043 | SAMN04488100_11044 | Histidine triad (HIT) family protein. | Gas vesicle protein. | 0.821 |
SEL77643.1 | SEM12798.1 | SAMN04488100_11043 | SAMN04488100_12734 | Histidine triad (HIT) family protein. | ADP-ribose pyrophosphatase. | 0.608 |
SEL77643.1 | SEM15186.1 | SAMN04488100_11043 | SAMN04488100_12923 | Histidine triad (HIT) family protein. | PLD-like domain-containing protein. | 0.924 |
SEL77643.1 | dinG | SAMN04488100_11043 | SAMN04488100_11145 | Histidine triad (HIT) family protein. | ATP-dependent DNA helicase DinG; 3'-5' exonuclease. | 0.667 |
SEL77643.1 | rpoB | SAMN04488100_11043 | SAMN04488100_1507 | Histidine triad (HIT) family protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.840 |
SEL77643.1 | rpoC | SAMN04488100_11043 | SAMN04488100_1506 | Histidine triad (HIT) family protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.901 |
SEL77643.1 | rpoZ | SAMN04488100_11043 | SAMN04488100_101121 | Histidine triad (HIT) family protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.834 |
SEL77643.1 | thyA | SAMN04488100_11043 | SAMN04488100_12222 | Histidine triad (HIT) family protein. | Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. | 0.610 |
SEL77671.1 | SEL77589.1 | SAMN04488100_11044 | SAMN04488100_11041 | Gas vesicle protein. | ABC-2 type transport system permease protein. | 0.561 |
SEL77671.1 | SEL77620.1 | SAMN04488100_11044 | SAMN04488100_11042 | Gas vesicle protein. | ABC-2 type transport system ATP-binding protein. | 0.534 |
SEL77671.1 | SEL77643.1 | SAMN04488100_11044 | SAMN04488100_11043 | Gas vesicle protein. | Histidine triad (HIT) family protein. | 0.821 |
SEM12798.1 | SEL77643.1 | SAMN04488100_12734 | SAMN04488100_11043 | ADP-ribose pyrophosphatase. | Histidine triad (HIT) family protein. | 0.608 |
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