STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL86846.1Hypothetical protein. (130 aa)    
Predicted Functional Partners:
SEL71709.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
  
     0.769
SEL81754.1
Protein of unknown function.
  
     0.769
SEL86822.1
General stress protein 13.
  
    0.767
secE
SecE/Sec61-gamma subunits of protein translocation complex; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.763
SEL40190.1
glutamyl-tRNA reductase.
  
     0.762
SEM17361.1
Protein of unknown function.
  
     0.762
SEL86901.1
Ribosomal protein S18 acetylase RimI.
 
     0.750
SEL54373.1
Hypothetical protein.
  
     0.749
SEL82046.1
Hypothetical protein.
  
     0.747
SEL71650.1
Competence protein ComGF.
  
     0.743
Your Current Organism:
Alkalibacterium putridalgicola
NCBI taxonomy Id: 426703
Other names: A. putridalgicola, Alkalibacterium putridalgicola Ishikawa et al. 2009, DSM 19182, NBRC 103243, NRIC 0720, strain T129-2-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.