STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL86901.1Ribosomal protein S18 acetylase RimI. (176 aa)    
Predicted Functional Partners:
SEL86846.1
Hypothetical protein.
 
     0.713
SEL81923.1
YceG-like family protein.
  
    0.712
SEL82046.1
Hypothetical protein.
  
     0.663
SEL54373.1
Hypothetical protein.
  
     0.568
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
       0.558
SEL77116.1
Oxygen-dependent protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
   
 0.489
SEL40190.1
glutamyl-tRNA reductase.
  
     0.478
SEL91532.1
AAA domain-containing protein.
 
     0.474
SEL87911.1
ABC-2 type transport system permease protein.
  
     0.456
SEL86822.1
General stress protein 13.
       0.433
Your Current Organism:
Alkalibacterium putridalgicola
NCBI taxonomy Id: 426703
Other names: A. putridalgicola, Alkalibacterium putridalgicola Ishikawa et al. 2009, DSM 19182, NBRC 103243, NRIC 0720, strain T129-2-1
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