Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEM04578.1 | SEM06489.1 | SAMN04488100_12215 | SAMN04488100_12327 | Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. | Serine protease Do. | 0.577 |
SEM06489.1 | SEM04578.1 | SAMN04488100_12327 | SAMN04488100_12215 | Serine protease Do. | Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. | 0.577 |
SEM06489.1 | SEM10993.1 | SAMN04488100_12327 | SAMN04488100_12612 | Serine protease Do. | Dihydrofolate reductase. | 0.636 |
SEM06489.1 | SEM24445.1 | SAMN04488100_12327 | SAMN04488100_1393 | Serine protease Do. | Energy-coupling factor transport system substrate-specific component. | 0.576 |
SEM06489.1 | SEM34885.1 | SAMN04488100_12327 | SAMN04488100_1566 | Serine protease Do. | Glycine/D-amino acid oxidase. | 0.558 |
SEM06489.1 | alaS | SAMN04488100_12327 | SAMN04488100_101174 | Serine protease Do. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.778 |
SEM06489.1 | dnaK | SAMN04488100_12327 | SAMN04488100_1018 | Serine protease Do. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.559 |
SEM06489.1 | ftsY | SAMN04488100_12327 | SAMN04488100_10952 | Serine protease Do. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.563 |
SEM06489.1 | glpK | SAMN04488100_12327 | SAMN04488100_11552 | Serine protease Do. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate. | 0.732 |
SEM06489.1 | glpK-2 | SAMN04488100_12327 | SAMN04488100_13312 | Serine protease Do. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.732 |
SEM06489.1 | secY | SAMN04488100_12327 | SAMN04488100_12426 | Serine protease Do. | Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.603 |
SEM10993.1 | SEM06489.1 | SAMN04488100_12612 | SAMN04488100_12327 | Dihydrofolate reductase. | Serine protease Do. | 0.636 |
SEM10993.1 | SEM34885.1 | SAMN04488100_12612 | SAMN04488100_1566 | Dihydrofolate reductase. | Glycine/D-amino acid oxidase. | 0.603 |
SEM24445.1 | SEM06489.1 | SAMN04488100_1393 | SAMN04488100_12327 | Energy-coupling factor transport system substrate-specific component. | Serine protease Do. | 0.576 |
SEM24445.1 | alaS | SAMN04488100_1393 | SAMN04488100_101174 | Energy-coupling factor transport system substrate-specific component. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.992 |
SEM24445.1 | dnaK | SAMN04488100_1393 | SAMN04488100_1018 | Energy-coupling factor transport system substrate-specific component. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.991 |
SEM24445.1 | glpK | SAMN04488100_1393 | SAMN04488100_11552 | Energy-coupling factor transport system substrate-specific component. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate. | 0.552 |
SEM24445.1 | glpK-2 | SAMN04488100_1393 | SAMN04488100_13312 | Energy-coupling factor transport system substrate-specific component. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.552 |
SEM34885.1 | SEM06489.1 | SAMN04488100_1566 | SAMN04488100_12327 | Glycine/D-amino acid oxidase. | Serine protease Do. | 0.558 |
SEM34885.1 | SEM10993.1 | SAMN04488100_1566 | SAMN04488100_12612 | Glycine/D-amino acid oxidase. | Dihydrofolate reductase. | 0.603 |
page 1 of 3