STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM09806.1Glyoxylase, beta-lactamase superfamily II. (267 aa)    
Predicted Functional Partners:
SEM15055.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
  
 0.778
SEM27118.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
  
 0.778
SEL56769.1
Uncharacterized membrane protein YesL.
  
     0.542
SEM28126.1
Hypothetical protein.
  
  
  0.520
SEM11180.1
Glycolate oxidase.
     
 0.506
SEL96805.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
   
 
  0.482
SEM24702.1
Helix-turn-helix.
  
 
  0.481
SEM35897.1
Catechol 2,3-dioxygenase.
   
 
  0.481
SEM05982.1
Fucose permease.
  
     0.478
SEM29682.1
Protease I.
   
 0.472
Your Current Organism:
Alkalibacterium putridalgicola
NCBI taxonomy Id: 426703
Other names: A. putridalgicola, Alkalibacterium putridalgicola Ishikawa et al. 2009, DSM 19182, NBRC 103243, NRIC 0720, strain T129-2-1
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