STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM16882.1Hypothetical protein. (284 aa)    
Predicted Functional Partners:
SEM28297.1
Hypothetical protein.
   
 0.910
SEM16912.1
Hypothetical protein; Belongs to the UPF0374 family.
     
 0.556
SEL57046.1
Glycosyl hydrolase family 67 N-terminus.
    
  0.506
SEL75405.1
Protein of unknown function.
    
  0.506
SEL96835.1
Protein of unknown function.
    
  0.506
SEL60551.1
Hypothetical protein.
   
   0.488
SEL47583.1
Putative lysine transport system substrate-binding protein.
     
 0.430
SEL42839.1
NTE family protein.
     
 0.416
SEL43361.1
BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase.
      
 0.414
SEL57674.1
Alpha galactosidase A.
    
  0.405
Your Current Organism:
Alkalibacterium putridalgicola
NCBI taxonomy Id: 426703
Other names: A. putridalgicola, Alkalibacterium putridalgicola Ishikawa et al. 2009, DSM 19182, NBRC 103243, NRIC 0720, strain T129-2-1
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