Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEL42589.1 | SEL58072.1 | SAMN04488100_101115 | SAMN04488100_10453 | Serine/threonine protein kinase. | Chemotaxis protein methyltransferase CheR. | 0.517 |
SEL42589.1 | SEL89192.1 | SAMN04488100_101115 | SAMN04488100_11455 | Serine/threonine protein kinase. | Protein of unknown function. | 0.586 |
SEL42589.1 | SEM21381.1 | SAMN04488100_101115 | SAMN04488100_1352 | Serine/threonine protein kinase. | Hypothetical protein. | 0.462 |
SEL42589.1 | SEM21404.1 | SAMN04488100_101115 | SAMN04488100_1353 | Serine/threonine protein kinase. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.462 |
SEL42589.1 | rpoZ | SAMN04488100_101115 | SAMN04488100_101121 | Serine/threonine protein kinase. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.505 |
SEL42589.1 | topA | SAMN04488100_101115 | SAMN04488100_12210 | Serine/threonine protein kinase. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.483 |
SEL58072.1 | SEL42589.1 | SAMN04488100_10453 | SAMN04488100_101115 | Chemotaxis protein methyltransferase CheR. | Serine/threonine protein kinase. | 0.517 |
SEL58072.1 | SEM21381.1 | SAMN04488100_10453 | SAMN04488100_1352 | Chemotaxis protein methyltransferase CheR. | Hypothetical protein. | 0.829 |
SEL58072.1 | SEM21404.1 | SAMN04488100_10453 | SAMN04488100_1353 | Chemotaxis protein methyltransferase CheR. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.829 |
SEL89192.1 | SEL42589.1 | SAMN04488100_11455 | SAMN04488100_101115 | Protein of unknown function. | Serine/threonine protein kinase. | 0.586 |
SEL89192.1 | SEM21381.1 | SAMN04488100_11455 | SAMN04488100_1352 | Protein of unknown function. | Hypothetical protein. | 0.863 |
SEL89192.1 | SEM21404.1 | SAMN04488100_11455 | SAMN04488100_1353 | Protein of unknown function. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.865 |
SEM21356.1 | SEM21381.1 | SAMN04488100_1351 | SAMN04488100_1352 | Glutathione synthase/RimK-type ligase, ATP-grasp superfamily. | Hypothetical protein. | 0.488 |
SEM21356.1 | SEM21404.1 | SAMN04488100_1351 | SAMN04488100_1353 | Glutathione synthase/RimK-type ligase, ATP-grasp superfamily. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.488 |
SEM21381.1 | SEL42589.1 | SAMN04488100_1352 | SAMN04488100_101115 | Hypothetical protein. | Serine/threonine protein kinase. | 0.462 |
SEM21381.1 | SEL58072.1 | SAMN04488100_1352 | SAMN04488100_10453 | Hypothetical protein. | Chemotaxis protein methyltransferase CheR. | 0.829 |
SEM21381.1 | SEL89192.1 | SAMN04488100_1352 | SAMN04488100_11455 | Hypothetical protein. | Protein of unknown function. | 0.863 |
SEM21381.1 | SEM21356.1 | SAMN04488100_1352 | SAMN04488100_1351 | Hypothetical protein. | Glutathione synthase/RimK-type ligase, ATP-grasp superfamily. | 0.488 |
SEM21381.1 | SEM21404.1 | SAMN04488100_1352 | SAMN04488100_1353 | Hypothetical protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.785 |
SEM21381.1 | rpoA | SAMN04488100_1352 | SAMN04488100_12431 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.628 |
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