STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM34885.1Glycine/D-amino acid oxidase. (519 aa)    
Predicted Functional Partners:
SEL95434.1
Fumarate reductase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 0.999
SEL78538.1
Predicted Zn-dependent peptidase.
  
 0.998
SEL78502.1
Predicted Zn-dependent peptidase.
   
 0.997
SEL89291.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
  
 0.979
SEL97841.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
  
 0.979
SEM15055.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
  
 0.970
SEM27118.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
  
 0.970
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
  
 0.964
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.963
acpP-2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
   
 0.963
Your Current Organism:
Alkalibacterium putridalgicola
NCBI taxonomy Id: 426703
Other names: A. putridalgicola, Alkalibacterium putridalgicola Ishikawa et al. 2009, DSM 19182, NBRC 103243, NRIC 0720, strain T129-2-1
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