FNYG_01896 protein (Fusarium nygamai) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FNYG_01896

CID domain-containing protein. (406 aa)

Predicted Functional Partners:

RPB2

0.990

RPB1

0.986

FNYG_09316

0.973

FNYG_13163

0.971

FNYG_12607

0.971

FNYG_04773

0.939

FNYG_03684

0.939

FNYG_04759

0.936

FNYG_07569

0.889

FNYG_13418

0.883

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_01896	FNYG_03684	A0A2K0WR94	A0A2K0WM55	CID domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.939
FNYG_01896	FNYG_04759	A0A2K0WR94	A0A2K0WHI1	CID domain-containing protein.	RTR1-type domain-containing protein.	0.936
FNYG_01896	FNYG_04773	A0A2K0WR94	A0A2K0WHJ0	CID domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.939
FNYG_01896	FNYG_07569	A0A2K0WR94	A0A2K0WA69	CID domain-containing protein.	RPOLD domain-containing protein.	0.889
FNYG_01896	FNYG_09316	A0A2K0WR94	A0A2K0W578	CID domain-containing protein.	Uncharacterized protein.	0.973
FNYG_01896	FNYG_12607	A0A2K0WR94	A0A2K0VVN7	CID domain-containing protein.	RAI1 domain-containing protein.	0.971
FNYG_01896	FNYG_13163	A0A2K0WR94	A0A2K0VTU8	CID domain-containing protein.	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.	0.971
FNYG_01896	FNYG_13418	A0A2K0WR94	A0A2K0VTC8	CID domain-containing protein.	RPOL4c domain-containing protein.	0.883
FNYG_01896	RPB1	A0A2K0WR94	A0A2K0WM34	CID domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.986
FNYG_01896	RPB2	A0A2K0WR94	A0A2K0UTM4	CID domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.990
FNYG_03684	FNYG_01896	A0A2K0WM55	A0A2K0WR94	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	CID domain-containing protein.	0.939
FNYG_03684	FNYG_04759	A0A2K0WM55	A0A2K0WHI1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RTR1-type domain-containing protein.	0.927
FNYG_03684	FNYG_04773	A0A2K0WM55	A0A2K0WHJ0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.896
FNYG_03684	FNYG_07569	A0A2K0WM55	A0A2K0WA69	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.986
FNYG_03684	FNYG_09316	A0A2K0WM55	A0A2K0W578	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.716
FNYG_03684	FNYG_13163	A0A2K0WM55	A0A2K0VTU8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.	0.413
FNYG_03684	FNYG_13418	A0A2K0WM55	A0A2K0VTC8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOL4c domain-containing protein.	0.977
FNYG_03684	RPB1	A0A2K0WM55	A0A2K0WM34	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.716
FNYG_04759	FNYG_01896	A0A2K0WHI1	A0A2K0WR94	RTR1-type domain-containing protein.	CID domain-containing protein.	0.936
FNYG_04759	FNYG_03684	A0A2K0WHI1	A0A2K0WM55	RTR1-type domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.927