FNYG_00224 protein (Fusarium nygamai) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FNYG_00224

MFS domain-containing protein. (511 aa)

Predicted Functional Partners:

FNYG_10368

0.559

FNYG_15253

0.434

FNYG_07251

0.434

FNYG_03891

0.434

RPB2

0.403

FNYG_11065

0.403

FNYG_03237

0.403

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_00224	FNYG_03237	A0A2K0WW70	A0A2K0WN32	MFS domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.403
FNYG_00224	FNYG_03891	A0A2K0WW70	A0A2K0WK59	MFS domain-containing protein.	Uncharacterized protein.	0.434
FNYG_00224	FNYG_07251	A0A2K0WW70	A0A2K0WAY3	MFS domain-containing protein.	Uncharacterized protein.	0.434
FNYG_00224	FNYG_10368	A0A2K0WW70	A0A2K0W204	MFS domain-containing protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.559
FNYG_00224	FNYG_11065	A0A2K0WW70	A0A2K0W070	MFS domain-containing protein.	Uncharacterized protein.	0.403
FNYG_00224	FNYG_15253	A0A2K0WW70	A0A2K0UHS5	MFS domain-containing protein.	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	0.434
FNYG_00224	RPB2	A0A2K0WW70	A0A2K0UTM4	MFS domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.403
FNYG_03237	FNYG_00224	A0A2K0WN32	A0A2K0WW70	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	MFS domain-containing protein.	0.403
FNYG_03237	FNYG_11065	A0A2K0WN32	A0A2K0W070	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.999
FNYG_03237	RPB2	A0A2K0WN32	A0A2K0UTM4	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
FNYG_03891	FNYG_00224	A0A2K0WK59	A0A2K0WW70	Uncharacterized protein.	MFS domain-containing protein.	0.434
FNYG_03891	FNYG_07251	A0A2K0WK59	A0A2K0WAY3	Uncharacterized protein.	Uncharacterized protein.	0.958
FNYG_03891	FNYG_10368	A0A2K0WK59	A0A2K0W204	Uncharacterized protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.937
FNYG_03891	FNYG_15253	A0A2K0WK59	A0A2K0UHS5	Uncharacterized protein.	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	0.958
FNYG_07251	FNYG_00224	A0A2K0WAY3	A0A2K0WW70	Uncharacterized protein.	MFS domain-containing protein.	0.434
FNYG_07251	FNYG_03891	A0A2K0WAY3	A0A2K0WK59	Uncharacterized protein.	Uncharacterized protein.	0.958
FNYG_07251	FNYG_10368	A0A2K0WAY3	A0A2K0W204	Uncharacterized protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.937
FNYG_07251	FNYG_15253	A0A2K0WAY3	A0A2K0UHS5	Uncharacterized protein.	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	0.959
FNYG_10368	FNYG_00224	A0A2K0W204	A0A2K0WW70	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	MFS domain-containing protein.	0.559
FNYG_10368	FNYG_03891	A0A2K0W204	A0A2K0WK59	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	Uncharacterized protein.	0.937