STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD77931.1Hypothetical protein. (165 aa)    
Predicted Functional Partners:
SDD77903.1
Putative membrane protein.
 
  
 0.969
SDE71866.1
Putative membrane protein.
 
  
 0.871
SDD77868.1
methylated-DNA-protein-cysteine methyltransferase related protein.
       0.773
SDD77967.1
Predicted membrane protein.
       0.536
SDD78000.1
Hypothetical protein.
       0.536
SDD77836.1
Amidase.
       0.494
SDE33327.1
Uncharacterized protein YlaI.
  
     0.421
SDE09857.1
PH domain-containing protein.
  
  
 0.410
Your Current Organism:
Bhargavaea beijingensis
NCBI taxonomy Id: 426756
Other names: B. beijingensis, Bacillus beijingensis, Bacillus beijingensis Qiu et al. 2009, Bacillus sp. ge09, Bacillus sp. ge10, Bhargavaea beijingensis (Qiu et al. 2009) Verma et al. 2012, CGMCC 1.6762, DSM 19037, strain ge10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.