STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE17088.1Anti-anti-sigma regulatory factor, SpoIIAA; Belongs to the anti-sigma-factor antagonist family. (148 aa)    
Predicted Functional Partners:
spoIIAB
Stage II sporulation protein AB (anti-sigma F factor); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
 
 
 0.996
SDE17029.1
RNA polymerase, sigma subunit, RpoX/SigF; Belongs to the sigma-70 factor family.
 
  
 0.949
SDE16996.1
Stage V sporulation protein AF.
 
     0.940
SDE77405.1
Stage II sporulation protein E.
  
  
 0.793
SDE15780.1
Stage IV sporulation protein A.
  
   
 0.791
SDE28967.1
Stage V sporulation protein AC.
 
   
 0.787
SDE55060.1
Stage II sporulation protein R.
  
   
 0.787
SDE55557.1
Putative DeoR family transcriptional regulator, stage III sporulation protein D.
  
   
 0.786
SDE28933.1
Stage V sporulation protein AD.
 
     0.783
SDE71454.1
RNA polymerase sigma-B factor; Belongs to the sigma-70 factor family.
  
  
 0.767
Your Current Organism:
Bhargavaea beijingensis
NCBI taxonomy Id: 426756
Other names: B. beijingensis, Bacillus beijingensis, Bacillus beijingensis Qiu et al. 2009, Bacillus sp. ge09, Bacillus sp. ge10, Bhargavaea beijingensis (Qiu et al. 2009) Verma et al. 2012, CGMCC 1.6762, DSM 19037, strain ge10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.