STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE57606.1Putative zincin peptidase. (180 aa)    
Predicted Functional Partners:
SDE96327.1
YwpF-like protein.
  
     0.734
SDE88440.1
DUF4097 and DUF4098 domain-containing protein YvlB.
  
     0.708
SDE57659.1
Gas vesicle protein.
 
     0.703
SDE92729.1
Hypothetical protein.
  
     0.699
SDE57638.1
MarR family transcriptional regulator, protease production regulatory protein HPr.
 
     0.669
SDE45590.1
Hypothetical protein.
  
     0.662
SDE56948.1
Uncharacterized membrane protein YheB, UPF0754 family.
  
     0.633
SDE61475.1
Hypothetical protein.
  
     0.625
SDE57580.1
Hypothetical protein.
       0.618
SDE28612.1
rsbT co-antagonist protein RsbR.
  
     0.567
Your Current Organism:
Bhargavaea beijingensis
NCBI taxonomy Id: 426756
Other names: B. beijingensis, Bacillus beijingensis, Bacillus beijingensis Qiu et al. 2009, Bacillus sp. ge09, Bacillus sp. ge10, Bhargavaea beijingensis (Qiu et al. 2009) Verma et al. 2012, CGMCC 1.6762, DSM 19037, strain ge10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.